Multi-echo spin-, asymmetric spin-, and gradient-echo echo-planar imaging MRI pulse sequence
11378638 · 2022-07-05
Assignee
Inventors
Cpc classification
G01R33/5602
PHYSICS
A61B5/055
HUMAN NECESSITIES
G01R33/50
PHYSICS
International classification
G01R33/561
PHYSICS
A61B5/055
HUMAN NECESSITIES
G01R33/50
PHYSICS
A61B5/00
HUMAN NECESSITIES
Abstract
An echo planar imaging technique in which a quadruple echo gradient and spin echo echo-planar imaging pulse sequence is utilized. The pulse train includes generation of two echo trains between an excitation pulse (90) and a refocusing pulse (180) to achieve two gradient echo images (also called T2*-weighted images); with one echo train directly after the 180 pulse, leading to asymmetric spin echo images (T2′-weighted images); and a last echo train afterward that generates spin echo images (T2-weighted). The technique has a number of advantages over existing techniques with regard to voxel size, mapping relative oxygen extraction, determining permeability, determining relative cerebral blood volume, vessel parameters (diameter, density, size, arterial/venous, etc.), stroke imaging, imaging perfusion, fMRI imaging, and additional benefits.
Claims
1. A method of performing echo-planar imaging, comprising: generating a quadruple echo gradient and spin echo echo-planar imaging pulse sequence, comprising a total of four echo trains, for a magnetic resonance imaging (MRI) system configured for generating MRI images of a patient in response to receiving and processing RF signals, wherein an MRI image generated by the MRI system using the quadruple echo gradient and spin echo echo-planar imaging pulse sequence has an in-plane resolution with reduced voxel size based on the four echo trains; wherein said quadruple echo gradient and spin echo echo-planar imaging pulse sequence is generated as two echo trains between a 90 degrees excitation pulse and a 180 degrees refocusing pulse to achieve two gradient echo images as T2*-weighted images and two echo trains after the 180° pulse; wherein the two echo trains after the 180° pulse of said quadruple echo gradient and spin echo echo-planar imaging pulse sequence are generated with one echo train directly after the 180° pulse, leading to asymmetric spin echo images as T2′-weighted images, and a last echo train of the four echo trains that generates spin echo images as T2-weighted images.
2. The method as recited in claim 1, wherein signals received from each scan performed with said quadruple echo gradient and spin echo echo-planar imaging pulse sequence results in generation of four images, each having different contrasts.
3. The method as recited in claim 1, wherein said quadruple echo gradient and spin echo echo-planar imaging pulse sequence is configured for driving a radio frequency coil, and magnetic resonance gradient coils within the MRI system.
4. The method as recited in claim 1, wherein said magnetic resonance gradient coils comprise Gx, Gy, and Gz gradient coils.
5. The method as recited in claim 1, wherein said quadruple echo gradient and spin echo echo-planar imaging pulse sequence is generated at field strengths of 3 T (Tesla).
6. The method as recited in claim 1, wherein obtaining four simultaneous and differently-weighted images allows determining of conditions requiring solving relationships of up to four unknowns.
7. The method as recited in claim 1, further comprising measuring hypoxia (R2′) in brain tumors in response to determining quantitative T2 and T2* measures, wherein four unknowns are solved in response to analyzing four differently-weighted images acquired simultaneously.
8. The method as recited in claim 7, further comprising determining relative oxygen extraction fraction (rOEF) in response to dividing R2′ by relative cerebral blood volume (rCBV).
9. The method as recited in claim 1, further comprising determining a forward transfer coefficient K.sub.trans, a biomarker that is related to the permeability of the vasculature in brain tumors, by determining a baseline T1-weighted image (S.sub.0) and combining the image S.sub.0 with a T1 map and two-compartment pharmacokinetic modeling of contrast agent exchange.
10. The method as recited in claim 1, further comprising determining mean vessel diameter, vessel density and vessel size for brain tumors in response to simultaneous acquisition of gradient echo and spin echo EPI sequences.
11. A method of performing echo-planar imaging, comprising: generating a quadruple echo gradient and spin echo echo-planar imaging pulse sequence, comprising a total of four echo trains, for a magnetic resonance imaging (MRI) system configured for generating MRI images of a patient in response to receiving and processing RF signals; driving a radio frequency coil and magnetic resonance gradient coils with said quadruple echo gradient and spin echo echo-planar imaging pulse sequence within the MRI system; wherein signals received from each scan performed with said quadruple echo gradient and spin echo echo-planar imaging pulse sequence results in generation of four images, each having different contrasts, and an in-plane resolution with a reduced voxel size based on the four echo trains; wherein said quadruple echo gradient and spin echo echo-planar imaging pulse sequence is generated as two echo trains between a 90 degrees excitation pulse and a 180 degrees refocusing pulse to achieve two gradient echo images as T2*-weighted images and two echo trains after the 180° pulse; wherein the two echo trains after the 180° pulse of said quadruple echo gradient and spin echo echo-planar imaging pulse sequence are generated with one echo train directly after the 180° pulse, leading to asymmetric spin echo images as T2′-weighted images, and a last echo train of the four echo trains that generates spin echo images as T2-weighted images.
12. The method as recited in claim 11, wherein said magnetic resonance gradient coils comprise Gx, Gy, and Gz gradient coils.
13. The method as recited in claim 11, wherein said quadruple echo gradient and spin echo echo-planar imaging pulse sequence is generated at field strengths of 3 T (Tesla).
14. The method as recited in claim 11, wherein obtaining four simultaneous and differently-weighted images allows determining of conditions requiring solving relationships of up to four unknowns.
15. The method as recited in claim 11, further comprising measuring hypoxia (R2′) in brain tumors in response to determining quantitative T2 and T2* measures, wherein four unknowns are solved in response to analyzing four differently-weighted images acquired simultaneously.
Description
BRIEF DESCRIPTION OF THE SEVERAL VIEWS OF THE DRAWING(S)
(1) The technology described herein will be more fully understood by reference to the following drawings which are for illustrative purposes only:
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DETAILED DESCRIPTION
(19) 1. Introduction.
(20) A quadruple echo gradient and spin echo EPI sequence is disclosed which provides numerous benefits. This spin echo technique can currently be performed at field strengths of 3 T (Tesla) in humans, while it is expected that the techniques can be applied at other field strengths (e.g., lower or higher) in both humans and preclinical (animal) models.
(21) 2. Quadruple Echo Gradient and Spin Echo EPI Sequence.
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(24) The disclosure is particularly well-suited for use in brain tumor scanning, although it may be utilized without limitation in other clinical and non-clinical applications.
(25) 3. Benefits of Disclosed Quadruple Echo EPI Sequence.
(26) The disclosed quadruple echo gradient and spin echo EPI sequence provides a number of advantages over other multi-echo sequences in brain tumors.
(27) 3.1 Reduced Voxel Size.
(28) In order to measure hypoxia in brain tumors, the system determines quantitative T2 and T2* measures. As stipulated by Eq. 1 (below), there are four unknowns: R2*, R2, δ, and S.sub.0. Therefore, to solve for each unknown, four images with different MR characteristics or “contrasts” must be acquired simultaneously. The advent of a three-echo EPI sequence does not allow for the quantitative calculation of T2, and therefore, would not allow us to calculate R.sub.2′ and oxygen extraction fraction. The advent of the five-echo version pushes the last echo to echo times that are too long to gain adequate signal relative to noise, unless the voxel resolution is reduced. Furthermore, the proposed 5-echo versions provides a minimum of a 2.857×2.857 mm in-plane resolution, which is a voxel size too large to be used for perfusion scans clinically, whereas the four-echo version allows reduction of the voxel size to 1.875×1.875 mm, which is the same size as the typical gradient echo EPI perfusion-weighted used for clinical purposes.
(29) 3.2 Quantitative T2/T2* Mapping and Relative Oxygen Extraction Fraction.
(30) The disclosed quadruple echo gradient and spin echo EPI sequence provides the ability to compute quantitative T2, T2*, or R2′; because there are two echoes that are T2*-weighted, quantitative T2* can be obtained.
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(33) A T2 map is seen in
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wherein R2*=1/T2* (quantitative), R2=1/T2 (quantitative), S.sub.0 is a scaling factor corresponding to spin density, and δ is a variable accounting for slice imperfections in the asymmetric and spin echoes.
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rOEF=(R2*−R2)/rCBV (2)
The above abilities are distinct from those of three-echo techniques which are unable to obtain quantitative T2 or R2′ since Eq. 1 requires a minimum of four echoes. Metabolic demand in brain tissues is the result of a coupling between perfusion and oxygen demand. In brain tumors, perfusion (i.e., blood flow) is much higher, so the brain tumor's oxygen demands are lower. We therefore expect brain tumors to demonstrate low rOEF since tumor tissues tend to exhibit weak oxygen metabolism as compared to normal brain tissue.
(36) 3.3 Permeability.
(37) The disclosed quadruple echo gradient and spin echo EPI sequence also provides permeability advantages over existing dual gradient-and-spin echo sequences. The configuration for using four echoes allows the disclosed device to determine a baseline T1-weighted image (S.sub.0) that can be combined with a T1 map and two-compartment pharmacokinetic modeling of contrast agent exchange to determine the forward transfer coefficient, K.sup.trans, a biomarker that is related to the permeability of the vasculature in brain tumors.
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where S.sub.0 is the signal intensity calculated from the equation in Eq. 1, S.sub.0,baseline is the pre-contrast signal intensity of S.sub.0, TR is the repetition time, T.sub.10 is the pre-contrast tissue r.sub.1, and c.sub.T(t) is the concentration of gadolinium, the variable that the system is solving for.
(40) 3.4 Gradient and Spin Echo Relative Cerebral Blood Volume.
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(42) It should be appreciated that these biomarkers cannot be obtained by conventional single-echo sequences.
(43) 3.5 Vessel Diameter, Density and Size.
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mVD=ΔR.sub.2*/ΔR.sub.2 (4)
Density=329.Math.(ΔR.sub.2).sup.3/(ΔR.sub.2*).sup.2 (5)
VSI=0.424.Math.(ADC/γΔχB.sub.0).sup.1/2(ΔR.sub.2*/ΔR.sub.2).sup.3/2 (6)
(46) wherein ΔR2* is the maximum T2* relaxivity achieved per voxel by the passage of contrast agent bolus through the vasculature on the gradient echo, ΔR2 is the maximum T2 relaxivity achieved per voxel on the spin echo, γ is the gyromagnetic ratio of proton, ΔX is the blood magnetic susceptibility of gadolinium, and B.sub.0 is field strength.
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(48) 3.6 Other Applications.
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(50) In addition to brain tumors, with the disclosed quadruple echo gradient and spin echo EPI sequence it is possible to image stroke, which relies on perfusion and vessel size index markers, spinal cord, in which perfusion has never before been accomplished (
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(53) 4. System Block Diagram.
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(57) The enhancements described in the presented technology can be readily implemented within various RF and gradient imaging system, primarily in regard to medical diagnostic images and in particular MRI and similar systems. It should also be appreciated that these systems are preferably implemented to include one or more computer processor devices (e.g., CPU, microprocessor, microcontroller, computer enabled ASIC, etc.) and associated memory storing instructions (e.g., RAM, DRAM, NVRAM, FLASH, computer readable media, etc.) whereby programming (instructions) stored in the memory are executed on the processor to perform the steps of the various process methods described herein. The presented technology is non-limiting with regard to memory and computer-readable media, insofar as these are non-transitory, and thus not constituting a transitory electronic signal.
(58) Embodiments of the present technology may be described herein with reference to flowchart illustrations of methods and systems according to embodiments of the technology, and/or procedures, algorithms, steps, operations, formulae, or other computational depictions, which may also be implemented as computer program products. In this regard, each block or step of a flowchart, and combinations of blocks (and/or steps) in a flowchart, as well as any procedure, algorithm, step, operation, formula, or computational depiction can be implemented by various means, such as hardware, firmware, and/or software including one or more computer program instructions embodied in computer-readable program code. As will be appreciated, any such computer program instructions may be executed by one or more computer processors, including without limitation a general purpose computer or special purpose computer, or other programmable processing apparatus to produce a machine, such that the computer program instructions which execute on the computer processor(s) or other programmable processing apparatus create means for implementing the function(s) specified.
(59) Accordingly, blocks of the flowcharts, and procedures, algorithms, steps, operations, formulae, or computational depictions described herein support combinations of means for performing the specified function(s), combinations of steps for performing the specified function(s), and computer program instructions, such as embodied in computer-readable program code logic means, for performing the specified function(s). It will also be understood that each block of the flowchart illustrations, as well as any procedures, algorithms, steps, operations, formulae, or computational depictions and combinations thereof described herein, can be implemented by special purpose hardware-based computer systems which perform the specified function(s) or step(s), or combinations of special purpose hardware and computer-readable program code.
(60) Furthermore, these computer program instructions, such as embodied in computer-readable program code, may also be stored in one or more computer-readable memory or memory devices that can direct a computer processor or other programmable processing apparatus to function in a particular manner, such that the instructions stored in the computer-readable memory or memory devices produce an article of manufacture including instruction means which implement the function specified in the block(s) of the flowchart(s). The computer program instructions may also be executed by a computer processor or other programmable processing apparatus to cause a series of operational steps to be performed on the computer processor or other programmable processing apparatus to produce a computer-implemented process such that the instructions which execute on the computer processor or other programmable processing apparatus provide steps for implementing the functions specified in the block(s) of the flowchart(s), procedure (s) algorithm(s), step(s), operation(s), formula(e), or computational depiction(s).
(61) It will further be appreciated that the terms “programming” or “program executable” as used herein refer to one or more instructions that can be executed by one or more computer processors to perform one or more functions as described herein. The instructions can be embodied in software, in firmware, or in a combination of software and firmware. The instructions can be stored local to the device in non-transitory media, or can be stored remotely such as on a server, or all or a portion of the instructions can be stored locally and remotely. Instructions stored remotely can be downloaded (pushed) to the device by user initiation, or automatically based on one or more factors.
(62) It will further be appreciated that as used herein, that the terms processor, computer processor, central processing unit (CPU), and computer are used synonymously to denote a device capable of executing the instructions and communicating with input/output interfaces and/or peripheral devices, and that the terms processor, computer processor, CPU, and computer are intended to encompass single or multiple devices, single core and multicore devices, and variations thereof.
(63) From the description herein, it will be appreciated that that the present disclosure encompasses multiple embodiments which include, but are not limited to, the following:
(64) 1. A method of performing echo-planar imaging, comprising: (a) generating a quadruple echo gradient and spin echo echo-planar imaging pulse sequence for a magnetic resonance imaging (MRI) system configured for generating MRI images of a patient in response to receiving and processing RF signals; (b) wherein said quadruple echo gradient and spin echo echo-planar imaging pulse sequence is generated as two echo trains between an excitation pulse (90°) and a refocusing pulse (180°) to achieve two gradient echo images as T2*-weighted images); (c) wherein said quadruple echo gradient and spin echo echo-planar imaging pulse sequence is generated with one echo train directly after the 180° pulse, leading to asymmetric spin echo images as T2′-weighted images; and (d) wherein a last echo train generates spin echo images as T2-weighted images.
(65) 2. The method of any preceding embodiment, wherein signals received from each scan performed with said quadruple echo gradient and spin echo echo-planar imaging pulse sequence results in generation of four images, each having different contrasts.
(66) 3. The method of any preceding embodiment, wherein said quadruple echo gradient and spin echo echo-planar imaging pulse sequence is configured for driving a radio frequency coil, and magnetic resonance gradient coils within the MRI system.
(67) 4. The method of any preceding embodiment, wherein said magnetic resonance gradient coils comprise Gx, Gy, and Gz gradient coils.
(68) 5. The method of any preceding embodiment, wherein said quadruple echo gradient and spin echo echo-planar imaging pulse sequence is generated at field strengths of approximately 3 T (Tesla).
(69) 6. The method of any preceding embodiment, wherein obtaining four simultaneous and differently-weighted images allows determining of conditions requiring solving relationships of up to four unknowns.
(70) 7. The method of any preceding embodiment, further comprising measuring hypoxia (R2′) in brain tumors in response to determining quantitative T2 and T2* measures, wherein four unknowns are solved in response to analyzing four differently-weighted images acquired simultaneously.
(71) 8. The method of any preceding embodiment, further comprising determining relative oxygen extraction fraction (rOEF) in response to dividing R2′ by relative cerebral blood volume (rCBV).
(72) 9. The method of any preceding embodiment, further comprising determining a forward transfer coefficient, K.sub.trans, as a biomarker that is related to the permeability of the vasculature in brain tumors wherein receipt of four echoes allows for determining a baseline T1-weighted image (S.sub.0) that can be combined with a T1 map and two-compartment pharmacokinetic modeling of contrast agent exchange.
(73) 10. The method of any preceding embodiment, further comprising determining mean vessel diameter, vessel density and vessel size for brain tumors in response to simultaneous acquisition of gradient echo and spin echo EPI sequences.
(74) 11. A method of performing echo-planar imaging, comprising: (a) generating a quadruple echo gradient and spin echo echo-planar imaging pulse sequence for a magnetic resonance imaging (MRI) system configured for generating MRI images of a patient in response to receiving and processing RF signals; (b) driving a radio frequency coil and magnetic resonance gradient coils with said quadruple echo gradient and spin echo echo-planar imaging pulse sequence within the MRI system; (c) wherein signals received from each scan performed with said quadruple echo gradient and spin echo echo-planar imaging pulse sequence results in generation of four images, each having different contrasts; (d) wherein said quadruple echo gradient and spin echo echo-planar imaging pulse sequence is generated as two echo trains between an excitation pulse (90°) and a refocusing pulse (180°) to achieve two gradient echo images as T2*-weighted images); (d) wherein said quadruple echo gradient and spin echo echo-planar imaging pulse sequence is generated with one echo train directly after the 180° pulse, leading to asymmetric spin echo images as T2′-weighted images; and (e) wherein a last echo train generates spin echo images as T2-weighted images.
(75) 12. The method of any preceding embodiment, wherein said magnetic resonance gradient coils comprise Gx, Gy, and Gz gradient coils.
(76) 13. The method of any preceding embodiment, wherein said quadruple echo gradient and spin echo echo-planar imaging pulse sequence is generated at field strengths of approximately 3 T (Tesla).
(77) 14. The method of any preceding embodiment, wherein obtaining four simultaneous and differently-weighted images allows determining of conditions requiring solving relationships of up to four unknowns.
(78) 15. The method of any preceding embodiment, further comprising measuring hypoxia (R2′) in brain tumors in response to determining quantitative T2 and T2* measures, wherein four unknowns are solved in response to analyzing four differently-weighted images acquired simultaneously.
(79) Although the description herein contains many details, these should not be construed as limiting the scope of the disclosure but as merely providing illustrations of some of the presently preferred embodiments. Therefore, it will be appreciated that the scope of the disclosure fully encompasses other embodiments which may become obvious to those skilled in the art.
(80) In the claims, reference to an element in the singular is not intended to mean “one and only one” unless explicitly so stated, but rather “one or more.” All structural and functional equivalents to the elements of the disclosed embodiments that are known to those of ordinary skill in the art are expressly incorporated herein by reference and are intended to be encompassed by the present claims. Furthermore, no element, component, or method step in the present disclosure is intended to be dedicated to the public regardless of whether the element, component, or method step is explicitly recited in the claims. No claim element herein is to be construed as a “means plus function” element unless the element is expressly recited using the phrase “means for”. No claim element herein is to be construed as a “step plus function” element unless the element is expressly recited using the phrase “step for”.
(81) TABLE-US-00001 TABLE 1 Sequence Parameter Table Sequence Parameter Value Parallel Imaging Reduction Factor 3 Matrix size (k.sub.x × k.sub.y) 128 × 104 Number of Slices 19 Slice Thickness 5 mm TR 2000 mS