SELF-HEALING MACROMOLECULAR CRYSTAL MATERIALS
20200384440 ยท 2020-12-10
Inventors
Cpc classification
B82Y20/00
PERFORMING OPERATIONS; TRANSPORTING
B32B9/00
PERFORMING OPERATIONS; TRANSPORTING
B01J20/24
PERFORMING OPERATIONS; TRANSPORTING
B82Y30/00
PERFORMING OPERATIONS; TRANSPORTING
B01J20/345
PERFORMING OPERATIONS; TRANSPORTING
B01J20/3425
PERFORMING OPERATIONS; TRANSPORTING
International classification
B01J20/26
PERFORMING OPERATIONS; TRANSPORTING
B01J20/24
PERFORMING OPERATIONS; TRANSPORTING
B01J20/28
PERFORMING OPERATIONS; TRANSPORTING
Abstract
Hybrid materials are disclosed including molecular/protein crystals integrated with synthetic polymers. The disclosed materials combine the structural order and periodicity of crystals, the adaptiveness and tunable mechanical properties of polymeric networks, and the chemical versatility of protein building blocks. Some of the properties of the disclosed materials include the following: 1) allows crystalswhich are typically rigid and brittleto expand and contract reversibly; 2) incorporates polymers to increase the mechanical toughness of the crystals and allow self-healing; 3) reversibly expand/contract crystal lattices and mobilize the protein components therein may provide a new means to improve X-ray diffraction quality and explore otherwise inaccessible protein structural states using 3D protein crystallography; 4) creation of chemically and mechanically differentiated domains within single crystals. Some example embodiments combine the properties of hydrogels (flexibility, adaptability, elasticity, self-healing), crystals (structural order) and proteins (chemical and genetic tailorability).
Claims
1. A flexible crystalline material comprising: a plurality of molecules forming a macromolecular crystal lattice; and a polymer distributed throughout the macromolecular crystal lattice, wherein the polymer changes one or more properties of the macromolecular crystal lattice in response to exposure to a material with one or more selected characteristics.
2. The flexible crystalline material of claim 1, wherein the one or more properties of the macromolecular crystal lattice include one or more of flexibility, brittleness, or hardness.
3. The flexible crystalline material of claim 1, wherein the one or more selected properties include one or more of ionic content, ionic strength, temperature, or pH.
4. The flexible crystalline material of claim 1, wherein the macromolecular crystal lattice and the polymer are structured so that the exposure to a material with the one or more selected characteristics causes the macromolecular crystal lattice to self-repair damage to a crystal structure.
5. The flexible crystalline material of claim 1, wherein the macromolecular crystal lattice and the polymer are selected so that intermolecular interactions between the plurality of molecules aid in the movement of subunits to their original locations during deswelling, allowing the macromolecular crystal lattice to self-heal.
6. The flexible crystalline material of claim 1, wherein the polymer is a hydrogel polymer comprising poly(acrylate-acrylamide).
7. The flexible crystalline material of claim 6, wherein the macromolecular crystal lattice and the polymer are selected so that, when the flexible crystal material is exposed to water, the hydrogel polymer causes the flexible crystalline material to expand in size, or when the flexible crystal material is exposed to a solution including sodium chloride, the hydrogel polymer causes the flexible crystalline material to contract in size.
8. (canceled)
9. The flexible crystalline material of claim 1, wherein the macromolecular crystal lattice and the polymer are selected to enable the flexible crystal material to return to one or more original dimensions after the flexible crystal material is exposed to calcium chloride.
10. The flexible crystalline material of claim 1, wherein the polymer includes polymerized monomers which are infused into the macromolecular crystal lattice and subsequently polymerized.
11. The flexible crystalline material of claim 1, wherein the macromolecular crystal lattice is a protein crystal or comprises ferritin.
12. (canceled)
13. The flexible crystalline material of claim 1, wherein the macromolecular crystal lattice includes amino acids, deoxyribonucleic acid (DNA), or ribonucleic acid (RNA).
14. The flexible crystalline material of claim 1, wherein the flexible crystal material is capable of repeatedly swelling and deswelling, wherein each time the flexible crystal material deswells, the crystal lattice reforms.
15. The flexible crystalline material of claim 1, wherein the crystal lattice is configured as a face centered cubic (fcc) structure.
16. The flexible crystalline material of claim 15, wherein the fcc structure is characterized by a mesoporous network including cube-shaped chambers that are interconnected by octahedron shaped cavities.
17. A flexible crystalline material comprising: a plurality of molecules forming a macromolecular crystal lattice; and a polymer diffused throughout the macromolecular crystal lattice, wherein when the flexible crystal material is exposed to a first liquid the polymer expands and changes the macromolecular crystal lattice, and when exposed to a second liquid the polymer contracts and the macromolecular crystal lattice is restored.
18. The flexible crystalline material of claim 17, wherein the polymer is a hydrogel polymer comprising poly(acrylate-acrylamide).
19. (canceled)
20. (canceled)
21. (canceled)
22. The flexible crystalline material of claim 17, wherein intermolecular interactions between the plurality of molecules aid in movement of subunits to their original locations during deswelling, allowing the crystal lattice to self-heal.
23. The flexible crystalline material of claim 17, wherein the first liquid is water that causes the flexible crystal material to expand in size, or wherein the second liquid is a sodium chloride solution that causes the flexible crystal material to contract in size.
24. (canceled)
25. The flexible crystalline material claim 17, wherein the flexible crystal material returns to one or more original dimensions after the flexible crystal material is exposed to a calcium chloride solution.
26. The flexible crystalline material of claim 17, wherein a plurality of monomers are infused into the macromolecular crystal lattice, and subsequently polymerized to form the polymer.
27. The flexible crystal material of claim 17, wherein the flexible crystal material is capable of repeatedly swelling and deswelling, wherein each time the flexible crystalline material deswells, the crystal lattice self-heals.
28. (canceled)
29. (canceled)
30. A method of causing a flexible crystal material to deswell, comprising: exposing the flexible crystalline material to a sodium chloride solution, wherein the flexible crystal material includes a protein crystal material and a polymer material, and wherein the sodium chloride solution causes a contraction of the polymer material due to the removal of water from the polymer.
31. The method of claim 30, further comprising: exposing the flexible crystalline material to a calcium chloride solution, wherein the calcium chloride solution causes the flexible crystal material to self-heal to an original set of crystal dimensions.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
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DETAILED DESCRIPTION
[0031] The disclosed subject matter includes hybrid materials including molecular/protein crystals integrated with synthetic polymers. These materials combine the structural order and periodicity of crystals, the adaptiveness and tunable mechanical properties of polymeric networks, and the chemical versatility of protein building blocks.
[0032] Disclosed are mixtures materials that create a hybrid form of crystalline matter that combines protein crystals with synthetic polymers to create hybrid materials. The integration of two substances circumvents the fundamental limitation that ordered substances are brittle and inflexible, and flexible materials are devoid of order.
[0033] Crystals are arrays of atoms or molecules periodically ordered in three-dimensional space through specific interactions. These interactions hold the neighboring constituents in a unique arrangement, crystalslike grains of salt, for examplecannot flex or expand. If hit by a blunt force, they shatter into pieces which cannot rejoin. As disclosed herein, the foregoing limitations can be circumvented by infusing protein crystals with a network of hydrogel polymers, which are essentially floppy, sticky chains that form a shape-memory mold around the protein molecules. This mold enables the protein crystals to heal themselves when they crack, as well as to expand (e.g., by up to 500 percent in volume or more) and contract without losing their crystallinity. In some example embodiments, the atomic-level order of the protein molecules may be increased upon expansion and contraction. The increased order may enable higher-resolution structures for a protein such as ferritin using x-ray radiation.
[0034] Crystal-hydrogel hybrid materials are examples of simultaneously tough and strong materials that can withstand fracture. Expansion and contraction may be used to store large biological agents like antibodies and nucleic acids, and then to release them in desired locations in the body for therapeutic purposes. The disclosed materials combine the structural order and periodicity of molecular crystals, the adaptiveness and tunable mechanical properties of synthetic polymers, and the chemical versatility of protein building blocks.
[0035] Some of the properties of the disclosed materials include the following: 1) allows crystalswhich are typically rigid and brittleto expand and contract reversibly; 2) incorporates polymers to increases the mechanical toughness of the crystals and allow self-healing; 3) reversibly expand/contract crystal lattices and mobilize the protein components therein may provide a new means to improve X-ray diffraction quality and explore otherwise inaccessible protein structural states using 3D protein crystallography; 4) creation of chemically and mechanically differentiated domains within single crystals. Some example embodiments combine the properties of hydrogels (flexibility, adaptability, elasticity, self-healing), crystals (structural order) and proteins (chemical and genetic tailorability).
[0036] Formation of condensed matter typically involves a trade-off between structural order and flexibility. As the extent and directionality of interactions between atomic or molecular components increase, materials generally become more ordered but less compliant and vice versa. Yet, high levels of structural order and flexibility need not be mutually exclusive. The extent of structural flexibility and, particularly, expandability is restricted by the continuous bonding network between the molecular constituents of the lattice. An aspect of the disclosed subject matter includes macromolecular ferritin crystals with integrated hydrogel polymers can isotropically expand their original dimensions and their original volume while retaining periodic order and faceted Wulff morphologies. For example, in some example embodiments, macromolecular ferritin crystals with integrated hydrogel polymers may expand to 180% of their original dimensions and >500% of their original volume. After the separation of neighboring ferritin molecules by, for example, 50 upon lattice expansion, specific molecular contacts between them can be reformed upon lattice contraction, resulting in the recovery of atomic-level periodicity. Dynamic bonding interactions between the hydrogel network and the ferritin molecules endow the crystals with the ability to resist fragmentation and self-heal efficiently, while the chemical tailorability of the ferritin molecules enables the creation of chemically and mechanically differentiated domains within single crystals.
[0037] A material consistent with some disclosed embodiments may be created by soaking crystals of human ferritin, an iron-storage protein, in a NaCl solution of hydrogel precursors. As the poly(acrylate-acrylamide) copolymer hydrogel forms, it integrates into void spaces in the protein crystal. The hydrogel and protein link to one another via ionic and hydrogen-bonding interactions, forming a true hybrid, not just a mixture. Placing the hybrid in deionized water eliminates NaCl and causes the material to expand to, for example, double (or another factor) its original linear dimensions and may expand to over five times (or another factor) its original volume. Adding NaCl dehydrates the hybrid, contracting it to nearly its original size. Adding CaCl2 instead of NaCl promotes interactions between ferritin molecules even more effectively, returning the hybrid to its original dimensions. X-ray diffraction of demonstrated full recovery of crystalline periodicity and was the highest resolution ferritin structure reported.
[0038] The lattices of the disclosed hybrids may be more ordered than those of conventionally produced ferritin. Polymer infusion may be a useful for improving the quality of other protein structures, or to access alternative structural states of proteins. The technique is applicable to other proteins other than ferritin. Diverse hybrid materials can be created by modifying and functionalizing the constituent proteins in various ways.
[0039] In some implementations, NaCl-mediated contraction may be reversible. Ca ions (which are 2+ charged) may bind more strongly to the polymer matrix which may cause Ca mediated contraction to be quasi-irreversible. If the samples are soaked long enough in pure water, the Ca ions may eventually leach out leading to expansion.
[0040] Consistent with some example embodiments are hydrogel polymers that lack structural order, but are highly elastic and adaptive, can expand considerably, and self-heal when equipped with dynamic bonding functionalities. The isotropic swelling-deswelling behavior of hydrogels may be leveraged to modulate the lattice spacing of colloidal nanoparticle arrays, and to expand biological tissue samples for facilitating high-resolution fluorescence imaging.
[0041] Consistent with some example embodiments are molecular crystals with the mechanical properties of hydrogels. For example, crystal lattices that are formed by discrete molecules that are connected via specific bonding interactions and may be mechanically modulated through the integration of polymeric hydrogels. In some example embodiments, the hydrogel-expandable molecular crystals, may have one or more of the following properties: 1) mesoporous lattices to enable the hydrogel network to penetrate efficiently and uniformly into the crystals; 2) intermolecular interactions between the constituents of the lattices that are reversible and chemically specific (i.e., contain directional and dynamic bonds), such that they disengage with ease during expansion and re-engage with high fidelity upon contraction; 3) interactions between the constituents of the lattice and the hydrogel network that are extensive that maintain the integrity of the crystal-polymer hybrid and sufficiently dynamic to minimize the build-up of local strain and to enable self-healing.
[0042] Consistent with one or more of the foregoing parameters are hybrid materials including ferritin crystals integrated with the superabsorbent poly(acrylate-acrylamide), or p(AcAm), copolymer hydrogels, whose swelling-deswelling behavior can be modulated by ionic strength and pH. Ferritin has one or more of the following characteristics: is a 24-meric, quasi-spherical protein with 432 symmetry, an outer diameter of 12 nm, an inner diameter of 8 nm, and a molecular weight of >500,000 Da. Human heavy-chain ferritin forms highly ordered, face-centered cubic (fcc) crystals that grow to >200 m in size and diffract to <2.0 . The fcc lattice (
[0043]
[0044] The disclosed subject matter explored efficiency of molecular diffusion and polymerization within ferritin crystals. Diffusion into single ferritin crystals may be assessed using the fluorescent tracer Rhodamine B by confocal fluorescence microscopy, which showed that a crystal (edge length, l.sub.edge=50-250 m) was completely infiltrated by the tracer within 15 min (
[0045] Full expansion of hydrogel-infused ferritin crystals may be initiated by placing them in deionized water. As monitored by light microscopy, the expansion of the crystals may be isotropic and their faceted, polyhedral morphologies may be preserved even after they grew to 210% of their original dimensions (
[0046]
[0047] pAc hydrogels are capable of promoting isotropic expansion of the crystals in the absence of Am co-monomers (
[0048] The expansion/contraction-related changes in the lattice arrangement of ferritin molecules may be revealed using small-angle X-ray scattering (SAXS).
[0049] In order to determine the reversibility of lattice expansion, a microfluidic flow cell may be used for single-crystal SAXS testing (
[0050]
[0051] Any local anisotropy developed during the expansion or contraction of the hydrogel matrix would be expected to cause dislocations in the embedded ferritin lattice. Exposure of hydrogel-infused crystals to rapid changes or temporary spatial gradients in NaCl or CaCl.sub.2 concentrations may lead to fracturing (see, for example,
[0052]
[0053] Due to the inherent chemical tailorability of ferritin molecules, the crystal-hydrogel hybrids may be functionalized in different ways. They may be constructed from ferritin molecules with mineralized ferrihydrite in their interior cavity (
[0054] Disclosed herein are materials that integrate macromolecular protein crystals with synthetic polymer networks. These hybrids combine the structural order and periodicity of crystals, the adaptiveness and tunable mechanical properties of polymeric networks, and the chemical versatility of protein building blocks. Additionally, the ability to reversibly expand/contract crystal lattices and mobilize the protein components may provide a new means to improve X-ray diffraction quality and explore otherwise inaccessible protein structural states using three-dimensional protein crystallography. Protein crystals are often highly porous, sometimes containing up to 90% solvent, and are usually assembled through weak, non-covalent packing interactions; therefore, our approach should be applicable to other protein lattices. Their potential for generalizability, coupled with the chemical tailorability of synthetic polymers and the genetic mutability of proteins, should make protein crystal-hydrogel hybrids a rich medium for materials science.
Example Methods
[0055] The descriptions below detail some illustrative examples of methods related to the disclosed subject matter. Other methods may be used in addition to the following methods or instead of them.
Protein Expression, Purification, and Characterization.
[0056] The plasmid for the C* variant of human heavy-chain ferritin (HuHF), devoid of all native cysteine residues (C90E, C102A, and C130A), was obtained via site-directed mutagenesis as previously described. Expression and purification of C* was performed according to the previously published protocol.
Determination of Zeta Potential with DLS.
[0057] Purified ferritin was concentrated to about 200 M and exchanged into a buffer solution containing 50 mM 2,2-Bis(hydroxymethyl)-2,2,2-nitrilotriethanol (Bis-Tris) (pH 6.0), 50 mM 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid (HEPES) (pH 7.0) or 50 mM HEPES (pH 7.5) utilizing an Amicon Ultra centrifugal filter unit (10 kDa cutoff). The zeta potentials of ferritin in the three different buffers were determined using a Zetasizer Nano ZS90 (Malvern Instruments). Experimental runs were performed to collect 12 datasets with a HeNe laser at 633 nm.
Formation of Crystal-Hydrogel Hybrids.
[0058] Polymer precursor solution: 25 mM 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid(HEPES; pH 7.0), 30 mM CaCl.sub.2, 917 mM (8.625% w/v) sodium acrylate, 352 mM (2.5% w/v) acrylamide, and 13 mM (0.2% w/v) N,N-methylenebisacrylamide. Polymerization solution: 4 M NaCl, 1% w/v APS, and 1% v/v TEMED. Octahedron-shaped ferritin crystals formed over 1-2 days in a buffered solution containing 25 mM HEPES pH 7.0, 3-14.5 M protein (per 24meric ferritin cage), and 4.5-7.5 mM CaCl.sub.2. Once the ferritin crystals matured, the crystallization solution was replaced with the polymer precursor solution. The crystals were soaked for >10 h to ensure full infusion of the monomers into the ferritin crystals and then individually transferred with a mounted CryoLoop (Hampton) to the polymerization solution for 5 min, initiating in crystallo polymerization. Alternatively, the crystallization solution was replaced with the polymerization solution for the bulk polymerization of many crystals at once.
Measurement of the Rate of Diffusion into Ferritin Crystals.
[0059] A large ferritin crystal was transferred with a mounted CryoLoop onto a glass slide and 20 L of a solution containing 20 M (0.01 mg/mL) rhodamine B, 30 mM CaCl.sub.2, and 25 mM HEPES (pH 7.0) was added to the crystal. The rhodamine diffusion process was monitored with a 10 air objective installed on a spinning-disk confocal Axio Observer inverted microscope (Zeiss) equipped with a pair of Quantum 5125C cameras (Roper), using a filter to collect light at 575-650 nm (red channel). Differential interference contrast (DIC) and fluorescence (564 nm excitation) images were captured at is intervals with 10 ms exposures. Images were collected in Slidebook 6 (Intelligent Imaging Innovations) and analyzed using Fiji (http://fiji.sc/Fiji).
Determination of in Crystallo Polymerization Dynamics.
[0060] Ferritin crystals were incubated in a polymer precursor solution supplemented with 5.7 mM (0.3%) pyranine (Sigma-Aldrich). After 12 h, an individual crystal was transferred onto a glass slide and polymerization was initiated by adding 10 L of the polymerization solution. Hydrogel polymerization throughout the crystal and the corresponding decrease of pyranine fluorescence were monitored with a 20 air objective on a confocal microscope as described above using a filter to collect light at 500-550 nm (green channel). DIC and fluorescence (488 nm excitation) images were captured at is intervals with 1 s exposures.
Scanning Electron Microscopy of Ferritin Crystals.
[0061] Native ferritin crystal and crystal-hydrogel hybrid samples were deposited onto glow-discharged, Formvar/carbon-coated Cu grids (Ted Pella Inc.). Each grid was blotted with filter paper to remove excess liquid. Grids were mounted onto a STEM 12 v2 sample holder and imaged using a Sigma 500 scanning electron microscope (Zeiss) at an accelerating voltage of 1 kV using a 30-m aperture.
[0062] Polymer quantification with 19F NMR. Large-scale crystallization of ferritin was carried out in a 24-well culture plate (Costar). 100 l of 25 M ferritin in 15 mM Tris (pH 7.4) and 150 mM NaCl) was combined with 100 l of a buffered solution containing 50 mM HEPES (pH 7.0) and 12 mM CaCl2. Crystals formed overnight and matured over 72 h. The solution in each well was replaced with 100 l of a polymer precursor soaking solution containing: 25 mM HEPES (pH 7.0), 30 mM CaCl2, 179.9 mM 2-(trifluoromethyl)acrylic acid, 744.8 mM sodium acrylate, 350.7 mM acrylamide and 20.4 mM N,N-methylenebis(acrylamide). After soaking overnight, this solution was removed, and the crystals were washed with a buffered solution (25 mM HEPES, pH 7.0; 30 mM CaCl.sub.2) to remove unincorporated monomers. Polymerization was initiated by replacing the washing solution with 100 L of the polymerization solution. After 10 min, the crystals were transferred into an Eppendorf tube and centrifuged at 2,000 g for 60 s. The supernatant was decanted, and the crystals were resuspended in 1 ml D.sub.2O. Concentrated HCl was added until the pH of the solution was approximately 4.0 to facilitate crystal decomposition. 705 l of this solution was transferred into an NMR tube and supplemented with 4.6 mM trifluoroacetic acid. The 19F-NMR spectrum was collected using a 300M Bruker AVA spectrometer with a 19F probe (
Monitoring Crystal Expansion/Contraction by Light Microscopy.
[0063] Single crystals were transferred with a mounted CryoLoop onto a glass slide with a microscopic ruler (OMAX). All images and videos were obtained on an SZX7 (Olympus) microscope equipped with an Infinity 1 charge-coupled device (CCD) (Luminera). For crystals that had not been polymerized, 10 L of the polymerization solution was carefully added to minimize crystal movement. This solution was removed prior to water addition. For previously polymerized crystals, water (Milli-Q, 30 L) was added and crystal expansion was observed over 5-20 min. To initiate crystal contraction, water was replaced with a solution containing either 4 M NaCl or 1 M CaCl.sub.2. Crystal contraction typically occurs rapidly (1-2 min). This expansion/contraction cycle could be repeated many times for a crystal if NaCl was used to induce crystal contraction. Crystal size was determined by measuring the edge length of a facet relative to the microscopic ruler using the Fiji image processing package.
Monitoring Crystal Expansion by Confocal Microscopy.
[0064] Crystals containing polymer precursors were prepared and transferred into the polymer precursor solution as described above. One of these crystals was transferred onto a clean glass slide and imaged on a confocal microscope. After capturing an initial image, the crystal was polymerized in 10 L of the polymerization solution, and expansion in 30 L water was monitored. DIC images were captured at different time intervals with 100 ms exposure until the crystal was no longer visible.
Quantification of Protein Release During Expansion.
[0065] Large-scale crystallization of ferritin was carried out as described above. Once crystals fully matured, the well solution was replaced with 100 L of the polymer precursor solution. After 12 h, the crystals were all combined into a single Eppendorf tube and 500 L of the polymerization solution was added. Crystals were expanded by replacing the polymerization solution with 1 mL water. During this experiment, aliquots (100 L) of the protein solution were removed, replaced with 100 L of water, and each aliquot was used to determine the protein concentration using the Bradford assay.
[0066] Multi-Crystal Expansion Monitored Using SAXS.
[0067] Crystals for multi-crystal small-angle X-ray scattering were prepared as described above and transferred into the polymer precursor solution. A large number (n>100) of crystals were transferred to an Eppendorf tube. After the crystals had settled at the bottom, they were transferred, along with 50 L of solution into a 1.5-mm quartz capillary (Hampton). Crystals in capillaries were analysed at beamline 5-ID-D of the Advanced Photon Source (Argonne National Laboratory). Data were collected using collimated X-ray radiation (0.7293 , 17 keV) calibrated with both a glassy carbon standard and a silicon diffraction grating. After the sample was mounted on the instrument, a thin tube (with a diameter of 0.51 mm) was inserted into the capillary to facilitate the addition of 50 L of solution with a syringe injector during x-ray exposure. The injected solution contained a more concentrated polymerization solution without NaCl (2% APS and 2% TEMED) in water. After the first exposure, the solution was injected and an image with a 1-s X-ray exposure was collected every 30 s. Peaks corresponding to the original lattice were visible throughout the process, indicating that some of the crystals in the bulk sample did not expand. This is probably due to limited solvent diffusion or incomplete polymerization within the capillary tubes used for the SAXS experiments. It is important to note that in this procedure, polymerized crystals immediately began expanding upon the commencement of data collection. The reason for this experimental strategy (instead of polymerization in a high-ionic-strength solution, followed by the initiation of expansion through lowering the ionic strength) is that it was not possible to sufficiently dilute the high-ionic-strength polymerization solution in the thin capillary tubes used for SAXS (which cannot accommodate addition of large volumes of solution) to enable expansion.
[0068] Scattered radiation was detected using a CCD area detector and one-dimensional scattering data were obtained through the azimuthal averaging of the two-dimensional data to produce plots of the scattering intensity as a function of the scattering vector length, q=4 sin(/) where is one-half of the scattering angle and A is the wavelength of the X-rays used. Analysis of the one-dimensional data was performed using the powder diffraction processing software JADE (MDI) or Origin (OriginLab).
Multi-Crystal SAXS at Elevated Temperatures.
[0069] Large-scale crystallization of ferritin was performed as described above. The crystallization solution was removed, and ferritin crystals were resuspended in either the polymer precursor solution or a buffered solution containing 25 mM HEPES (pH 7.0) and 30 mM CaCl2. After 72 h, the polymer precursor soaking solution was replaced with the polymerization solution. After 10 min, this was also replaced with a buffered solution containing 25 mM HEPES (pH 7.0), 4 M NaCl and 30 mM CaCl2. Both samples, containing either native ferritin crystals or the crystal-hydrogel hybrids, were transferred into 1.5-mm quartz capillaries (Hampton). Data were collected at beamline 4-2 of SSRL using collimated X-ray radiation (1.1271 , 11 keV) calibrated with a silver behenate standard. The samples were heated using a custom-built thermal stage operating at 1 C. min.sup.1, and images with a 1-s X-ray exposure were collected every minute. Scattered radiation was detected using a Pilatus31M detector (Detectris) and processed as described above.
Single-Crystal SAXS.
[0070] Crystals containing the polymer precursors were prepared and as described above and shipped to Stanford Synchrotron Radiation Lightsource (SSRL) for analysis. Crystals were polymerized on site in the polymerization solution as described above and were analysed at SSRL (beamline 4-2). Single crystals may be harvested with a mounted CryoLoop and transferred into a 2 M NaCl solution in a 400 m-diameter central well of a microfluidic chip. The microfluidic chip may be sealed with a coverslip, attached to a syringe injector, and mounted on beamline 4-2 at SSRL for data collection. Data may be collected using collimated X-ray radiation (1.127 , 11 keV) calibrated with a silver behenate standard. Water may be injected into the microfluidic chip at 1 l s.sup.1 to initiate expansion, and 0.5-s-exposure images were taken every about 2.5 s for 4 min. After the data acquisition for crystal expansion is complete, the process may be repeatedin the order 4 M NaCl, water, 1 M CaCl.sub.2, waterto monitor repeated contraction and expansion processes. Data may be collected using a Pilatus31M detector (Detectris). The unit-cell parameters may be determined by calculating the radial distance of individual reflections, after fitting the spot intensity to a two-dimensional Gaussian surface.
Single-Crystal XRD at Room Temperature.
[0071] Crystals containing polymer precursors were prepared and imaged by light microscopy as described above. A single crystal was transferred onto a MicroMount precision tool (MiTeGen) with a 100 m aperture and sealed with a MicroRT Capillary (MiTeGen). Data were acquired on a Bruker APEX II CCD diffractometer using Cu K radiation (1.5418 ) at 295 K. Three images (60 s exposure) were collected at rotation angles =0, 60 and 120. The crystal was removed from the instrument and soaked in 10 L of the polymerization solution for 2 min. The crystal was transferred onto a clean microscopic ruler and 30 L water was added. Crystal expansion was measured over 3 min. This crystal was returned to the MicroMount with the MicroRT capillary and an identical three-image dataset was collected. This process was repeated using 30 l of a 1 M CaCl2 solution. After the crystal had contracted (1 min), another three-image dataset was collected. Images were analyzed with the Apex III software.
Single-Crystal XRD at 100 K.
[0072] Crystal-hydrogel hybrids were prepared and imaged using light microscopy as described above. Two crystals were harvested, 30 L of water was added, and crystal expansion was monitored over 5 min for both crystals. After 5 min, the water was removed and 30 L of either a solution containing 1 M CaCl2 (Crystal A) or 4 M NaCl (Crystal B) was added. Crystal B was re-expanded in 30 L water. After 5 min, water was replaced with 30 L of a 1 M CaCl2 solution to contract Crystal B. After contraction, both crystals were cryoprotected in perfluoropolyether (Hampton) and frozen in liquid N2. Single-crystal XRD data for the contracted ferritin crystals were collected at 100 K at beamline 9-2 of SSRL using 0.98- radiation. The data were integrated using iMosflm and scaled with Aimless (
[0073] Nanoindentation measurements of crystals. The mechanical properties of the native ferritin crystals and the crystal-hydrogel hybrids were determined using a Hysitron TI 950 Triboindenter test instrument (Bruker). All crystals were dried before the indentation experiments. A Berkovich probe (TI-0039, 142.3, 100 nm tip radius) was used to determine the hardness and reduced modulus of the native crystals and crystal-hydrogel hybrids. Experiments were conducted in displacement control mode using a displacement of 1,000 nm. Preparation of iron-loaded ferritin. Iron-loaded ferritin was prepared by adding 10.8 mL of 10 mM (NH.sub.4)2Fe(SO4).sub.2 over 2 h to 144.8 ml of a vigorously stirring solution containing 1 M ferritin, 15 mM Tris (pH 7.4) and 150 mM NaCl. After the addition was complete, the solution was stirred for an additional hour before being concentrated to about 3 mL using a 10 kDa Amicon membrane. A 10DG column (Bio-Rad) was used to remove any unbound iron. Iron content was assessed by using a 2-2-bipyridine-based colorimetric assay and the protein concentration was determined using the Bradford assay. Each ferritin cage contained about 800 Fe atoms.
Formation of Core-Shell Ferritin Crystals.
Expandable Core/Expandable Shell Crystals.
[0074] Mature ferritin crystals were transferred to a buffered solution containing 25 mM HEPES (pH 7.0), 30 mM CaCl.sub.2, and 1.9 mM (1 mg/mL) 5-(and 6)-carboxytetramethyl rhodamine succinimidyl ester (NHS-rhodamine; Thermo Fisher Scientific). After soaking for 12 h, an individual crystal was removed and washed three times in a buffered solution containing 25 mM HEPES (pH 7.0) and 30 mM CaCl.sub.2 to remove unbound NHS-rhodamine. The crystal was transferred to a well containing 10 L of 12.5 M ferritin, 25 mM HEPES (pH 7.0), and 6 mM CaCl2. A transparent layer of ferritin formed around the rhodamine-labeled ferritin crystal over 12 h (creating a red core and a transparent shell). This crystal was soaked in a polymer precursor solution and polymerized as described above to yield an expandable core/expandable shell crystal.
Fixed Core/Expandable Shell Crystals.
[0075] Fixed core/expandable shell ferritin crystals were prepared similarly to the expandable core/expandable shell crystals described above. The only difference was that after the rhodamine labeling step, the crystal was transferred into a solution containing 2.5% v/v glutaraldehyde, 25 mM HEPES (pH 7.0) and 30 mM CaCl.sub.2. After 12 h, the crystal was washed five times with water to remove unbound glutaraldehyde, followed by the epitaxial growth of the transparent layer of ferritin crystals on top of the core layer in a fresh crystallization solution containing 12.5 M ferritin. This crystal was then soaked in a polymer precursor solution and polymerized as described above to yield a fixed core/expandable shell crystal.
Data Availability.
[0076] Crystal structures have been deposited in the Research Collaboratory for Structural Bioinformatics Protein Data Bank under accession codes 6B8F (ferritin-polymer hybrid crystal 1; https://www.rcsb.org/structure/6b8f) and 6B8G (ferritin-polymer hybrid crystal 2; https://www.rcsb.org/
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[0080]
[0081] Although a few variations have been described in detail above, other modifications or additions are possible. In particular, further features and/or variations may be provided in addition to those set forth herein. Moreover, the example embodiments described above may be directed to various combinations and subcombinations of the disclosed features and/or combinations and subcombinations of several further features disclosed above. In addition, the logic flow depicted in the accompanying figures and/or described herein does not require the particular order shown, or sequential order, to achieve desirable results. Other embodiments may be within the scope of the following claims.
[0082] Similarly, while operations are depicted in the drawings in a particular order, this should not be understood as requiring that such operations be performed in the particular order shown or in sequential order, or that all illustrated operations be performed, to achieve desirable results. Moreover, the separation of various elements in the embodiments described in this patent document should not be understood as requiring such separation in all embodiments.
[0083] Only a few implementations and examples are described and other implementations, enhancements and variations can be made based on what is described and illustrated in this patent document.